BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(39 letters)
Database: mirna
4361 sequences; 427,140 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-let-7b MI0000829 Rattus norvegicus let-7b stem-loop 78 4e-017
hsa-let-7b MI0000063 Homo sapiens let-7b stem-loop 78 4e-017
mmu-let-7b MI0000558 Mus musculus let-7b stem-loop 74 6e-016
mdo-let-7b MI0005351 Monodelphis domestica let-7b stem-loop 70 9e-015
tni-let-7b MI0003345 Tetraodon nigroviridis let-7b stem-loop 62 2e-012
fru-let-7b MI0003344 Fugu rubripes let-7b stem-loop 62 2e-012
dre-let-7b MI0001865 Danio rerio let-7b stem-loop 62 2e-012
gga-let-7b MI0001172 Gallus gallus let-7b stem-loop 60 9e-012
rno-let-7c-2 MI0000831 Rattus norvegicus let-7c-2 stem-loop 46 1e-007
mmu-let-7c-2 MI0000560 Mus musculus let-7c-2 stem-loop 46 1e-007
mdo-let-7a-3 MI0005350 Monodelphis domestica let-7a-3 stem-loop 40 8e-006
xtr-let-7e-2 MI0004909 Xenopus tropicalis let-7e-2 stem-loop 40 8e-006
tni-let-7a-2 MI0003314 Tetraodon nigroviridis let-7a-2 stem-loop 40 8e-006
ssc-let-7c MI0002445 Sus scrofa let-7c stem-loop 40 8e-006
dre-let-7c-2 MI0001867 Danio rerio let-7c-2 stem-loop 40 8e-006
dre-let-7a-3 MI0001860 Danio rerio let-7a-3 stem-loop 40 8e-006
gga-let-7c MI0001174 Gallus gallus let-7c stem-loop 40 8e-006
rno-let-7c-1 MI0000830 Rattus norvegicus let-7c-1 stem-loop 40 8e-006
mmu-let-7c-1 MI0000559 Mus musculus let-7c-1 stem-loop 40 8e-006
hsa-let-7c MI0000064 Homo sapiens let-7c stem-loop 40 8e-006
xtr-let-7c MI0004886 Xenopus tropicalis let-7c stem-loop 38 3e-005
tni-let-7a-1 MI0003408 Tetraodon nigroviridis let-7a-1 stem-loop 38 3e-005
fru-let-7a-2 MI0003313 Fugu rubripes let-7a-2 stem-loop 38 3e-005
dre-let-7c-1 MI0001866 Danio rerio let-7c-1 stem-loop 38 3e-005
gga-let-7a-3 MI0001171 Gallus gallus let-7a-3 stem-loop 38 3e-005
hsa-let-7a-3 MI0000062 Homo sapiens let-7a-3 stem-loop 38 3e-005
tni-let-7a-3 MI0003245 Tetraodon nigroviridis let-7a-3 stem-loop 36 1e-004
fru-let-7a-3 MI0003244 Fugu rubripes let-7a-3 stem-loop 36 1e-004
dre-let-7a-6 MI0001863 Danio rerio let-7a-6 stem-loop 36 1e-004
dre-let-7a-5 MI0001862 Danio rerio let-7a-5 stem-loop 36 1e-004
cbr-let-7 MI0000491 Caenorhabditis briggsae let-7 stem-loop 36 1e-004
cel-let-7 MI0000001 Caenorhabditis elegans let-7 stem-loop 36 1e-004
dre-let-7a-4 MI0001861 Danio rerio let-7a-4 stem-loop 34 5e-004
gga-let-7j MI0001262 Gallus gallus let-7j stem-loop 34 5e-004
mdo-let-7a-1 MI0005360 Monodelphis domestica let-7a-1 stem-loop 32 0.002
mdo-let-7a-2 MI0005330 Monodelphis domestica let-7a-2 stem-loop 32 0.002
bta-let-7a MI0005057 Bos taurus let-7a stem-loop 32 0.002
bta-mir-98 MI0005025 Bos taurus miR-98 stem-loop 32 0.002
bmo-let-7 MI0004968 Bombyx mori let-7 stem-loop 32 0.002
xtr-let-7a MI0004908 Xenopus tropicalis let-7a stem-loop 32 0.002
xtr-let-7e-1 MI0004907 Xenopus tropicalis let-7e-1 stem-loop 32 0.002
fru-let-7a-1 MI0003407 Fugu rubripes let-7a-1 stem-loop 32 0.002
tni-let-7h MI0003208 Tetraodon nigroviridis let-7h stem-loop 32 0.002
fru-let-7h MI0003207 Fugu rubripes let-7h stem-loop 32 0.002
dre-let-7h MI0001875 Danio rerio let-7h stem-loop 32 0.002
dre-let-7a-2 MI0001858 Danio rerio let-7a-2 stem-loop 32 0.002
dre-let-7a-1 MI0001857 Danio rerio let-7a-1 stem-loop 32 0.002
dps-let-7 MI0001288 Drosophila pseudoobscura let-7 stem-loop 32 0.002
gga-let-7a-2 MI0001259 Gallus gallus let-7a-2 stem-loop 32 0.002
gga-let-7a-1 MI0001234 Gallus gallus let-7a-1 stem-loop 32 0.002
rno-mir-98 MI0000882 Rattus norvegicus miR-98 stem-loop 32 0.002
rno-let-7a-2 MI0000828 Rattus norvegicus let-7a-2 stem-loop 32 0.002
rno-let-7a-1 MI0000827 Rattus norvegicus let-7a-1 stem-loop 32 0.002
mmu-mir-98 MI0000586 Mus musculus miR-98 stem-loop 32 0.002
mmu-let-7a-2 MI0000557 Mus musculus let-7a-2 stem-loop 32 0.002
mmu-let-7a-1 MI0000556 Mus musculus let-7a-1 stem-loop 32 0.002
dme-let-7 MI0000416 Drosophila melanogaster let-7 stem-loop 32 0.002
hsa-let-7a-2 MI0000061 Homo sapiens let-7a-2 stem-loop 32 0.002
hsa-let-7a-1 MI0000060 Homo sapiens let-7a-1 stem-loop 32 0.002
ptr-mir-98 MI0002697 Pan troglodytes miR-98 stem-loop 30 0.008
dre-mir-206-1 MI0002045 Danio rerio miR-206-1 stem-loop 30 0.008
gga-mir-206 MI0001207 Gallus gallus miR-206 stem-loop 30 0.008
hsa-mir-98 MI0000100 Homo sapiens miR-98 stem-loop 30 0.008
mdo-let-7d MI0005362 Monodelphis domestica let-7d stem-loop 28 0.032
bta-let-7d MI0005026 Bos taurus let-7d stem-loop 28 0.032
xtr-let-7b MI0004787 Xenopus tropicalis let-7b stem-loop 28 0.032
rno-let-7d MI0000601 Rattus norvegicus let-7d stem-loop 28 0.032
mmu-let-7d MI0000405 Mus musculus let-7d stem-loop 28 0.032
hsa-let-7d MI0000065 Homo sapiens let-7d stem-loop 28 0.032
mdo-let-7f-1 MI0005361 Monodelphis domestica let-7f-1 stem-loop 26 0.13
mdo-let-7i MI0005332 Monodelphis domestica let-7i stem-loop 26 0.13
bta-let-7i MI0005065 Bos taurus let-7i stem-loop 26 0.13
bta-let-7f-1 MI0005062 Bos taurus let-7f-1 stem-loop 26 0.13
xtr-let-7i MI0004889 Xenopus tropicalis let-7i stem-loop 26 0.13
tni-let-7i MI0003296 Tetraodon nigroviridis let-7i stem-loop 26 0.13
fru-let-7i MI0003295 Fugu rubripes let-7i stem-loop 26 0.13
ppa-mir-98 MI0002701 Pan paniscus miR-98 stem-loop 26 0.13
age-mir-98 MI0002700 Ateles geoffroyi miR-98 stem-loop 26 0.13
ppy-mir-98 MI0002699 Pongo pygmaeus miR-98 stem-loop 26 0.13
ggo-mir-98 MI0002698 Gorilla gorilla miR-98 stem-loop 26 0.13
mml-mir-98 MI0002696 Macaca mulatta miR-98 stem-loop 26 0.13
ssc-let-7i MI0002447 Sus scrofa let-7i stem-loop 26 0.13
dre-mir-27c MI0001930 Danio rerio miR-27c stem-loop 26 0.13
dre-let-7i MI0001876 Danio rerio let-7i stem-loop 26 0.13
dre-let-7f MI0001872 Danio rerio let-7f stem-loop 26 0.13
gga-let-7f MI0001233 Gallus gallus let-7f stem-loop 26 0.13
gga-let-7i MI0001168 Gallus gallus let-7i stem-loop 26 0.13
rno-let-7i MI0000835 Rattus norvegicus let-7i stem-loop 26 0.13
rno-let-7f-1 MI0000833 Rattus norvegicus let-7f-1 stem-loop 26 0.13
mmu-let-7f-1 MI0000562 Mus musculus let-7f-1 stem-loop 26 0.13
hsa-let-7i MI0000434 Homo sapiens let-7i stem-loop 26 0.13
mmu-let-7i MI0000138 Mus musculus let-7i stem-loop 26 0.13
hsa-let-7f-1 MI0000067 Homo sapiens let-7f-1 stem-loop 26 0.13
mdo-let-7f-2 MI0005349 Monodelphis domestica let-7f-2 stem-loop 24 0.50
mdo-let-7g MI0005331 Monodelphis domestica let-7g stem-loop 24 0.50
bta-let-7g MI0005051 Bos taurus let-7g stem-loop 24 0.50
xtr-let-7f MI0004887 Xenopus tropicalis let-7f stem-loop 24 0.50
bta-let-7f-2 MI0004734 Bos taurus let-7f-2 stem-loop 24 0.50
tni-let-7g MI0003462 Tetraodon nigroviridis let-7g stem-loop 24 0.50
fru-let-7g MI0003461 Fugu rubripes let-7g stem-loop 24 0.50
ssc-let-7f MI0002446 Sus scrofa let-7f stem-loop 24 0.50
dre-let-7g-2 MI0001874 Danio rerio let-7g-2 stem-loop 24 0.50
dre-let-7g-1 MI0001873 Danio rerio let-7g-1 stem-loop 24 0.50
gga-let-7g MI0001230 Gallus gallus let-7g stem-loop 24 0.50
rno-let-7f-2 MI0000834 Rattus norvegicus let-7f-2 stem-loop 24 0.50
mmu-let-7f-2 MI0000563 Mus musculus let-7f-2 stem-loop 24 0.50
hsa-let-7g MI0000433 Homo sapiens let-7g stem-loop 24 0.50
mmu-let-7g MI0000137 Mus musculus let-7g stem-loop 24 0.50
hsa-let-7f-2 MI0000068 Homo sapiens let-7f-2 stem-loop 24 0.50
mdo-mir-206 MI0005317 Monodelphis domestica miR-206 stem-loop 22 2.0
xtr-mir-23b MI0004913 Xenopus tropicalis miR-23b stem-loop 22 2.0
bta-mir-26b MI0004745 Bos taurus miR-26b stem-loop 22 2.0
mmu-mir-216b MI0004126 Mus musculus mir-216b stem-loop 22 2.0
mmu-mir-744 MI0004124 Mus musculus mir-744 stem-loop 22 2.0
tni-let-7e MI0003214 Tetraodon nigroviridis let-7e stem-loop 22 2.0
fru-let-7e MI0003213 Fugu rubripes let-7e stem-loop 22 2.0
mne-mir-206 MI0002620 Macaca nemestrina miR-206 stem-loop 22 2.0
ppy-mir-206 MI0002619 Pongo pygmaeus miR-206 stem-loop 22 2.0
dre-let-7e MI0001871 Danio rerio let-7e stem-loop 22 2.0
dre-mir-182 MI0001368 Danio rerio miR-182 stem-loop 22 2.0
gga-let-7k MI0001263 Gallus gallus let-7k stem-loop 22 2.0
ath-MIR399b MI0001021 Arabidopsis thaliana miR399b stem-loop 22 2.0
rno-mir-352 MI0000644 Rattus norvegicus miR-352 stem-loop 22 2.0
hsa-mir-206 MI0000490 Homo sapiens miR-206 stem-loop 22 2.0
hsa-mir-26b MI0000084 Homo sapiens miR-26b stem-loop 22 2.0
>rno-let-7b MI0000829 Rattus norvegicus let-7b stem-loop
Length = 85
Score = 77.8 bits (39), Expect = 4e-017
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtga 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cggggtgaggtagtaggttgtgtggtttcagggcagtga 40
>hsa-let-7b MI0000063 Homo sapiens let-7b stem-loop
Length = 83
Score = 77.8 bits (39), Expect = 4e-017
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtga 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtga 39
>mmu-let-7b MI0000558 Mus musculus let-7b stem-loop
Length = 85
Score = 73.8 bits (37), Expect = 6e-016
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcagggcagtga 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggcagtga 40
>mdo-let-7b MI0005351 Monodelphis domestica let-7b stem-loop
Length = 88
Score = 69.9 bits (35), Expect = 9e-015
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggtttcagggcagtga 39
||||||||||||||||||||||||||||||||| |||||
Sbjct: 3 cggggtgaggtagtaggttgtgtggtttcagggtagtga 41
>tni-let-7b MI0003345 Tetraodon nigroviridis let-7b stem-loop
Length = 84
Score = 61.9 bits (31), Expect = 2e-012
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcaggg 33
|||||||||||||||||||||||||||||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcaggg 33
>fru-let-7b MI0003344 Fugu rubripes let-7b stem-loop
Length = 84
Score = 61.9 bits (31), Expect = 2e-012
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcaggg 33
|||||||||||||||||||||||||||||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcaggg 33
>dre-let-7b MI0001865 Danio rerio let-7b stem-loop
Length = 94
Score = 61.9 bits (31), Expect = 2e-012
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgtgtggtttcaggg 33
|||||||||||||||||||||||||||||||
Sbjct: 8 gggtgaggtagtaggttgtgtggtttcaggg 38
>gga-let-7b MI0001172 Gallus gallus let-7b stem-loop
Length = 85
Score = 60.0 bits (30), Expect = 9e-012
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtgtggtttcagggcagtga 39
|||||||||||||||||||||||||||| |||||
Sbjct: 6 tgaggtagtaggttgtgtggtttcagggtagtga 39
>rno-let-7c-2 MI0000831 Rattus norvegicus let-7c-2 stem-loop
Length = 95
Score = 46.1 bits (23), Expect = 1e-007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgtgtggttt 28
|||||||||||||||||||| ||||||
Sbjct: 10 ggggtgaggtagtaggttgtatggttt 36
>mmu-let-7c-2 MI0000560 Mus musculus let-7c-2 stem-loop
Length = 95
Score = 46.1 bits (23), Expect = 1e-007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgtgtggttt 28
|||||||||||||||||||| ||||||
Sbjct: 10 ggggtgaggtagtaggttgtatggttt 36
>mdo-let-7a-3 MI0005350 Monodelphis domestica let-7a-3 stem-loop
Length = 79
Score = 40.1 bits (20), Expect = 8e-006
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
||||||||||||||||||||
Sbjct: 1 ggggtgaggtagtaggttgt 20
>xtr-let-7e-2 MI0004909 Xenopus tropicalis let-7e-2 stem-loop
Length = 93
Score = 40.1 bits (20), Expect = 8e-006
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
||||||||||||||||||||
Sbjct: 8 ggggtgaggtagtaggttgt 27
>tni-let-7a-2 MI0003314 Tetraodon nigroviridis let-7a-2 stem-loop
Length = 84
Score = 40.1 bits (20), Expect = 8e-006
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
||||||||||||||||||||
Sbjct: 8 ggggtgaggtagtaggttgt 27
>ssc-let-7c MI0002445 Sus scrofa let-7c stem-loop
Length = 94
Score = 40.1 bits (20), Expect = 8e-006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggttt 28
|||| |||||||||||||||| ||||||
Sbjct: 11 cgggttgaggtagtaggttgtatggttt 38
>dre-let-7c-2 MI0001867 Danio rerio let-7c-2 stem-loop
Length = 92
Score = 40.1 bits (20), Expect = 8e-006
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtgtggtttc 29
|||||||||||||||| |||||||
Sbjct: 15 tgaggtagtaggttgtatggtttc 38
>dre-let-7a-3 MI0001860 Danio rerio let-7a-3 stem-loop
Length = 107
Score = 40.1 bits (20), Expect = 8e-006
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
||||||||||||||||||||
Sbjct: 14 ggggtgaggtagtaggttgt 33
>gga-let-7c MI0001174 Gallus gallus let-7c stem-loop
Length = 84
Score = 40.1 bits (20), Expect = 8e-006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggttt 28
|||| |||||||||||||||| ||||||
Sbjct: 6 cgggttgaggtagtaggttgtatggttt 33
>rno-let-7c-1 MI0000830 Rattus norvegicus let-7c-1 stem-loop
Length = 94
Score = 40.1 bits (20), Expect = 8e-006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggttt 28
|||| |||||||||||||||| ||||||
Sbjct: 11 cgggttgaggtagtaggttgtatggttt 38
>mmu-let-7c-1 MI0000559 Mus musculus let-7c-1 stem-loop
Length = 94
Score = 40.1 bits (20), Expect = 8e-006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggttt 28
|||| |||||||||||||||| ||||||
Sbjct: 11 cgggttgaggtagtaggttgtatggttt 38
>hsa-let-7c MI0000064 Homo sapiens let-7c stem-loop
Length = 84
Score = 40.1 bits (20), Expect = 8e-006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgtgtggttt 28
|||| |||||||||||||||| ||||||
Sbjct: 6 cgggttgaggtagtaggttgtatggttt 33
>xtr-let-7c MI0004886 Xenopus tropicalis let-7c stem-loop
Length = 94
Score = 38.2 bits (19), Expect = 3e-005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtgtggttt 28
|||||||||||||||| ||||||
Sbjct: 16 tgaggtagtaggttgtatggttt 38
>tni-let-7a-1 MI0003408 Tetraodon nigroviridis let-7a-1 stem-loop
Length = 74
Score = 38.2 bits (19), Expect = 3e-005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgt 21
|||||||||||||||||||
Sbjct: 3 gggtgaggtagtaggttgt 21
>fru-let-7a-2 MI0003313 Fugu rubripes let-7a-2 stem-loop
Length = 76
Score = 38.2 bits (19), Expect = 3e-005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgt 21
|||||||||||||||||||
Sbjct: 1 gggtgaggtagtaggttgt 19
>dre-let-7c-1 MI0001866 Danio rerio let-7c-1 stem-loop
Length = 107
Score = 38.2 bits (19), Expect = 3e-005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtgtggttt 28
|||||||||||||||| ||||||
Sbjct: 23 tgaggtagtaggttgtatggttt 45
>gga-let-7a-3 MI0001171 Gallus gallus let-7a-3 stem-loop
Length = 76
Score = 38.2 bits (19), Expect = 3e-005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgt 21
|||||||||||||||||||
Sbjct: 1 gggtgaggtagtaggttgt 19
>hsa-let-7a-3 MI0000062 Homo sapiens let-7a-3 stem-loop
Length = 74
Score = 38.2 bits (19), Expect = 3e-005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgt 21
|||||||||||||||||||
Sbjct: 1 gggtgaggtagtaggttgt 19
>tni-let-7a-3 MI0003245 Tetraodon nigroviridis let-7a-3 stem-loop
Length = 96
Score = 36.2 bits (18), Expect = 1e-004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgt 21
||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgt 21
>fru-let-7a-3 MI0003244 Fugu rubripes let-7a-3 stem-loop
Length = 96
Score = 36.2 bits (18), Expect = 1e-004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgt 21
||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgt 21
>dre-let-7a-6 MI0001863 Danio rerio let-7a-6 stem-loop
Length = 129
Score = 36.2 bits (18), Expect = 1e-004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgt 21
||||||||||||||||||
Sbjct: 27 ggtgaggtagtaggttgt 44
>dre-let-7a-5 MI0001862 Danio rerio let-7a-5 stem-loop
Length = 124
Score = 36.2 bits (18), Expect = 1e-004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgt 21
||||||||||||||||||
Sbjct: 26 ggtgaggtagtaggttgt 43
>cbr-let-7 MI0000491 Caenorhabditis briggsae let-7 stem-loop
Length = 87
Score = 36.2 bits (18), Expect = 1e-004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgt 21
||||||||||||||||||
Sbjct: 11 ggtgaggtagtaggttgt 28
>cel-let-7 MI0000001 Caenorhabditis elegans let-7 stem-loop
Length = 99
Score = 36.2 bits (18), Expect = 1e-004
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgt 21
||||||||||||||||||
Sbjct: 15 ggtgaggtagtaggttgt 32
>dre-let-7a-4 MI0001861 Danio rerio let-7a-4 stem-loop
Length = 93
Score = 34.2 bits (17), Expect = 5e-004
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1 cggggtgaggtagtaggttgt 21
|||| ||||||||||||||||
Sbjct: 10 cgggatgaggtagtaggttgt 30
>gga-let-7j MI0001262 Gallus gallus let-7j stem-loop
Length = 83
Score = 34.2 bits (17), Expect = 5e-004
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||||||||
Sbjct: 1 gtgaggtagtaggttgt 17
>mdo-let-7a-1 MI0005360 Monodelphis domestica let-7a-1 stem-loop
Length = 92
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 15 tgaggtagtaggttgt 30
>mdo-let-7a-2 MI0005330 Monodelphis domestica let-7a-2 stem-loop
Length = 73
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 5 tgaggtagtaggttgt 20
>bta-let-7a MI0005057 Bos taurus let-7a stem-loop
Length = 80
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 6 tgaggtagtaggttgt 21
>bta-mir-98 MI0005025 Bos taurus miR-98 stem-loop
Length = 119
Score = 32.2 bits (16), Expect = 0.002
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
|||||||||||||| |||||
Sbjct: 18 ggggtgaggtagtaagttgt 37
>bmo-let-7 MI0004968 Bombyx mori let-7 stem-loop
Length = 104
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 20 tgaggtagtaggttgt 35
>xtr-let-7a MI0004908 Xenopus tropicalis let-7a stem-loop
Length = 89
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 14 tgaggtagtaggttgt 29
>xtr-let-7e-1 MI0004907 Xenopus tropicalis let-7e-1 stem-loop
Length = 90
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 11 tgaggtagtaggttgt 26
Score = 24.3 bits (12), Expect = 0.50
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 12 agtaggttgtgt 23
||||||||||||
Sbjct: 75 agtaggttgtgt 64
>fru-let-7a-1 MI0003407 Fugu rubripes let-7a-1 stem-loop
Length = 74
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 6 tgaggtagtaggttgt 21
>tni-let-7h MI0003208 Tetraodon nigroviridis let-7h stem-loop
Length = 99
Score = 32.2 bits (16), Expect = 0.002
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgtgt 23
|||||||||||| |||||||
Sbjct: 16 ggtgaggtagtaagttgtgt 35
>fru-let-7h MI0003207 Fugu rubripes let-7h stem-loop
Length = 84
Score = 32.2 bits (16), Expect = 0.002
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgtgt 23
|||||||||||| |||||||
Sbjct: 4 ggtgaggtagtaagttgtgt 23
>dre-let-7h MI0001875 Danio rerio let-7h stem-loop
Length = 114
Score = 32.2 bits (16), Expect = 0.002
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 4 ggtgaggtagtaggttgtgt 23
|||||||||||| |||||||
Sbjct: 17 ggtgaggtagtaagttgtgt 36
>dre-let-7a-2 MI0001858 Danio rerio let-7a-2 stem-loop
Length = 84
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 11 tgaggtagtaggttgt 26
>dre-let-7a-1 MI0001857 Danio rerio let-7a-1 stem-loop
Length = 89
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 11 tgaggtagtaggttgt 26
>dps-let-7 MI0001288 Drosophila pseudoobscura let-7 stem-loop
Length = 77
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 11 tgaggtagtaggttgt 26
>gga-let-7a-2 MI0001259 Gallus gallus let-7a-2 stem-loop
Length = 72
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 5 tgaggtagtaggttgt 20
>gga-let-7a-1 MI0001234 Gallus gallus let-7a-1 stem-loop
Length = 90
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 13 tgaggtagtaggttgt 28
>rno-mir-98 MI0000882 Rattus norvegicus miR-98 stem-loop
Length = 108
Score = 32.2 bits (16), Expect = 0.002
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
|||||||||||||| |||||
Sbjct: 12 ggggtgaggtagtaagttgt 31
>rno-let-7a-2 MI0000828 Rattus norvegicus let-7a-2 stem-loop
Length = 96
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 17 tgaggtagtaggttgt 32
>rno-let-7a-1 MI0000827 Rattus norvegicus let-7a-1 stem-loop
Length = 94
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 13 tgaggtagtaggttgt 28
>mmu-mir-98 MI0000586 Mus musculus miR-98 stem-loop
Length = 108
Score = 32.2 bits (16), Expect = 0.002
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 ggggtgaggtagtaggttgt 21
|||||||||||||| |||||
Sbjct: 12 ggggtgaggtagtaagttgt 31
>mmu-let-7a-2 MI0000557 Mus musculus let-7a-2 stem-loop
Length = 96
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 17 tgaggtagtaggttgt 32
>mmu-let-7a-1 MI0000556 Mus musculus let-7a-1 stem-loop
Length = 94
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 13 tgaggtagtaggttgt 28
>dme-let-7 MI0000416 Drosophila melanogaster let-7 stem-loop
Length = 78
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 11 tgaggtagtaggttgt 26
>hsa-let-7a-2 MI0000061 Homo sapiens let-7a-2 stem-loop
Length = 72
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 5 tgaggtagtaggttgt 20
>hsa-let-7a-1 MI0000060 Homo sapiens let-7a-1 stem-loop
Length = 80
Score = 32.2 bits (16), Expect = 0.002
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||||||||
Sbjct: 6 tgaggtagtaggttgt 21
>ptr-mir-98 MI0002697 Pan troglodytes miR-98 stem-loop
Length = 119
Score = 30.2 bits (15), Expect = 0.008
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgt 21
||||||||||||| |||||
Sbjct: 19 gggtgaggtagtaagttgt 37
>dre-mir-206-1 MI0002045 Danio rerio miR-206-1 stem-loop
Length = 99
Score = 30.2 bits (15), Expect = 0.008
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggtttcaggg 33
|||||||||||||||
Sbjct: 74 tgtgtggtttcaggg 88
>gga-mir-206 MI0001207 Gallus gallus miR-206 stem-loop
Length = 76
Score = 30.2 bits (15), Expect = 0.008
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggtttcaggg 33
|||||||||||||||
Sbjct: 60 tgtgtggtttcaggg 74
>hsa-mir-98 MI0000100 Homo sapiens miR-98 stem-loop
Length = 119
Score = 30.2 bits (15), Expect = 0.008
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 3 gggtgaggtagtaggttgt 21
||||||||||||| |||||
Sbjct: 19 gggtgaggtagtaagttgt 37
>mdo-let-7d MI0005362 Monodelphis domestica let-7d stem-loop
Length = 106
Score = 28.2 bits (14), Expect = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttg 20
||||||||||||||
Sbjct: 17 gaggtagtaggttg 30
>bta-let-7d MI0005026 Bos taurus let-7d stem-loop
Length = 87
Score = 28.2 bits (14), Expect = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttg 20
||||||||||||||
Sbjct: 9 gaggtagtaggttg 22
>xtr-let-7b MI0004787 Xenopus tropicalis let-7b stem-loop
Length = 82
Score = 28.2 bits (14), Expect = 0.032
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtgt 23
||||||||||| ||||||
Sbjct: 6 tgaggtagtagtttgtgt 23
>rno-let-7d MI0000601 Rattus norvegicus let-7d stem-loop
Length = 98
Score = 28.2 bits (14), Expect = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttg 20
||||||||||||||
Sbjct: 15 gaggtagtaggttg 28
>mmu-let-7d MI0000405 Mus musculus let-7d stem-loop
Length = 103
Score = 28.2 bits (14), Expect = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttg 20
||||||||||||||
Sbjct: 17 gaggtagtaggttg 30
>hsa-let-7d MI0000065 Homo sapiens let-7d stem-loop
Length = 87
Score = 28.2 bits (14), Expect = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gaggtagtaggttg 20
||||||||||||||
Sbjct: 9 gaggtagtaggttg 22
>mdo-let-7f-1 MI0005361 Monodelphis domestica let-7f-1 stem-loop
Length = 87
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 6 gtgaggtagtagattgt 22
>mdo-let-7i MI0005332 Monodelphis domestica let-7i stem-loop
Length = 84
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>bta-let-7i MI0005065 Bos taurus let-7i stem-loop
Length = 84
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>bta-let-7f-1 MI0005062 Bos taurus let-7f-1 stem-loop
Length = 87
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 6 gtgaggtagtagattgt 22
>xtr-let-7i MI0004889 Xenopus tropicalis let-7i stem-loop
Length = 85
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>tni-let-7i MI0003296 Tetraodon nigroviridis let-7i stem-loop
Length = 84
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>fru-let-7i MI0003295 Fugu rubripes let-7i stem-loop
Length = 84
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>ppa-mir-98 MI0002701 Pan paniscus miR-98 stem-loop
Length = 80
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
||||||||||| |||||
Sbjct: 1 gtgaggtagtaagttgt 17
>age-mir-98 MI0002700 Ateles geoffroyi miR-98 stem-loop
Length = 80
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
||||||||||| |||||
Sbjct: 1 gtgaggtagtaagttgt 17
>ppy-mir-98 MI0002699 Pongo pygmaeus miR-98 stem-loop
Length = 80
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
||||||||||| |||||
Sbjct: 1 gtgaggtagtaagttgt 17
>ggo-mir-98 MI0002698 Gorilla gorilla miR-98 stem-loop
Length = 80
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
||||||||||| |||||
Sbjct: 1 gtgaggtagtaagttgt 17
>mml-mir-98 MI0002696 Macaca mulatta miR-98 stem-loop
Length = 80
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
||||||||||| |||||
Sbjct: 1 gtgaggtagtaagttgt 17
>ssc-let-7i MI0002447 Sus scrofa let-7i stem-loop
Length = 85
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>dre-mir-27c MI0001930 Danio rerio miR-27c stem-loop
Length = 88
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 16 ggttgtgtggtttcagg 32
||||||||||| |||||
Sbjct: 1 ggttgtgtggtgtcagg 17
>dre-let-7i MI0001876 Danio rerio let-7i stem-loop
Length = 95
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 11 tgaggtagtagtttgtg 27
>dre-let-7f MI0001872 Danio rerio let-7f stem-loop
Length = 116
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 19 gtgaggtagtagattgt 35
>gga-let-7f MI0001233 Gallus gallus let-7f stem-loop
Length = 87
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 6 gtgaggtagtagattgt 22
>gga-let-7i MI0001168 Gallus gallus let-7i stem-loop
Length = 84
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>rno-let-7i MI0000835 Rattus norvegicus let-7i stem-loop
Length = 85
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>rno-let-7f-1 MI0000833 Rattus norvegicus let-7f-1 stem-loop
Length = 89
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 7 gtgaggtagtagattgt 23
>mmu-let-7f-1 MI0000562 Mus musculus let-7f-1 stem-loop
Length = 89
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 7 gtgaggtagtagattgt 23
>hsa-let-7i MI0000434 Homo sapiens let-7i stem-loop
Length = 84
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>mmu-let-7i MI0000138 Mus musculus let-7i stem-loop
Length = 85
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgtg 22
||||||||||| |||||
Sbjct: 6 tgaggtagtagtttgtg 22
>hsa-let-7f-1 MI0000067 Homo sapiens let-7f-1 stem-loop
Length = 87
Score = 26.3 bits (13), Expect = 0.13
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 5 gtgaggtagtaggttgt 21
|||||||||||| ||||
Sbjct: 6 gtgaggtagtagattgt 22
>mdo-let-7f-2 MI0005349 Monodelphis domestica let-7f-2 stem-loop
Length = 80
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 5 tgaggtagtagattgt 20
>mdo-let-7g MI0005331 Monodelphis domestica let-7g stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 5 tgaggtagtagtttgt 20
>bta-let-7g MI0005051 Bos taurus let-7g stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 5 tgaggtagtagtttgt 20
>xtr-let-7f MI0004887 Xenopus tropicalis let-7f stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 8 tgaggtagtagattgt 23
>bta-let-7f-2 MI0004734 Bos taurus let-7f-2 stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 8 tgaggtagtagattgt 23
>tni-let-7g MI0003462 Tetraodon nigroviridis let-7g stem-loop
Length = 79
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 6 tgaggtagtagtttgt 21
>fru-let-7g MI0003461 Fugu rubripes let-7g stem-loop
Length = 79
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 6 tgaggtagtagtttgt 21
>ssc-let-7f MI0002446 Sus scrofa let-7f stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 8 tgaggtagtagattgt 23
>dre-let-7g-2 MI0001874 Danio rerio let-7g-2 stem-loop
Length = 97
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 14 tgaggtagtagtttgt 29
>dre-let-7g-1 MI0001873 Danio rerio let-7g-1 stem-loop
Length = 96
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 14 tgaggtagtagtttgt 29
>gga-let-7g MI0001230 Gallus gallus let-7g stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 5 tgaggtagtagtttgt 20
>rno-let-7f-2 MI0000834 Rattus norvegicus let-7f-2 stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 8 tgaggtagtagattgt 23
>mmu-let-7f-2 MI0000563 Mus musculus let-7f-2 stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 8 tgaggtagtagattgt 23
>hsa-let-7g MI0000433 Homo sapiens let-7g stem-loop
Length = 84
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 5 tgaggtagtagtttgt 20
>mmu-let-7g MI0000137 Mus musculus let-7g stem-loop
Length = 88
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 7 tgaggtagtagtttgt 22
>hsa-let-7f-2 MI0000068 Homo sapiens let-7f-2 stem-loop
Length = 83
Score = 24.3 bits (12), Expect = 0.50
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 6 tgaggtagtaggttgt 21
||||||||||| ||||
Sbjct: 8 tgaggtagtagattgt 23
>mdo-mir-206 MI0005317 Monodelphis domestica miR-206 stem-loop
Length = 76
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggtttc 29
|||||||||||
Sbjct: 60 tgtgtggtttc 70
>xtr-mir-23b MI0004913 Xenopus tropicalis miR-23b stem-loop
Length = 88
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Minus
Query: 16 ggttgtgtggt 26
|||||||||||
Sbjct: 81 ggttgtgtggt 71
>bta-mir-26b MI0004745 Bos taurus miR-26b stem-loop
Length = 85
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 14 taggttgtgtg 24
|||||||||||
Sbjct: 31 taggttgtgtg 41
>mmu-mir-216b MI0004126 Mus musculus mir-216b stem-loop
Length = 86
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Minus
Query: 19 tgtgtggtttc 29
|||||||||||
Sbjct: 56 tgtgtggtttc 46
>mmu-mir-744 MI0004124 Mus musculus mir-744 stem-loop
Length = 100
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Minus
Query: 19 tgtgtggtttc 29
|||||||||||
Sbjct: 65 tgtgtggtttc 55
>tni-let-7e MI0003214 Tetraodon nigroviridis let-7e stem-loop
Length = 100
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtag 16
|||||||||||
Sbjct: 15 tgaggtagtag 25
>fru-let-7e MI0003213 Fugu rubripes let-7e stem-loop
Length = 100
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtag 16
|||||||||||
Sbjct: 15 tgaggtagtag 25
>mne-mir-206 MI0002620 Macaca nemestrina miR-206 stem-loop
Length = 86
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggtttc 29
|||||||||||
Sbjct: 68 tgtgtggtttc 78
>ppy-mir-206 MI0002619 Pongo pygmaeus miR-206 stem-loop
Length = 86
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggtttc 29
|||||||||||
Sbjct: 68 tgtgtggtttc 78
>dre-let-7e MI0001871 Danio rerio let-7e stem-loop
Length = 100
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtag 16
|||||||||||
Sbjct: 15 tgaggtagtag 25
>dre-mir-182 MI0001368 Danio rerio miR-182 stem-loop
Length = 68
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 4 ggtgaggtagt 14
|||||||||||
Sbjct: 28 ggtgaggtagt 38
>gga-let-7k MI0001263 Gallus gallus let-7k stem-loop
Length = 83
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 6 tgaggtagtag 16
|||||||||||
Sbjct: 4 tgaggtagtag 14
>ath-MIR399b MI0001021 Arabidopsis thaliana miR399b stem-loop
Length = 135
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Minus
Query: 25 gtttcagggca 35
|||||||||||
Sbjct: 129 gtttcagggca 119
>rno-mir-352 MI0000644 Rattus norvegicus miR-352 stem-loop
Length = 96
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 10 gtagtaggttg 20
|||||||||||
Sbjct: 64 gtagtaggttg 74
>hsa-mir-206 MI0000490 Homo sapiens miR-206 stem-loop
Length = 86
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggtttc 29
|||||||||||
Sbjct: 68 tgtgtggtttc 78
>hsa-mir-26b MI0000084 Homo sapiens miR-26b stem-loop
Length = 77
Score = 22.3 bits (11), Expect = 2.0
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 14 taggttgtgtg 24
|||||||||||
Sbjct: 28 taggttgtgtg 38
Database: mirna
Posted date: Dec 13, 2006 2:18 PM
Number of letters in database: 427,140
Number of sequences in database: 4361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4361
Number of Hits to DB: 393
Number of extensions: 126
Number of successful extensions: 126
Number of sequences better than 10.0: 125
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 126
Length of query: 39
Length of database: 427,140
Length adjustment: 12
Effective length of query: 27
Effective length of database: 374,808
Effective search space: 10119816
Effective search space used: 10119816
X1: 9 (17.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 9 (18.3 bits)
S2: 10 (20.3 bits)