SciMiner SciMiner 1.1
SciMiner
Version 1.1

SciMiner

Biomedical Literature Mining Tool

Dictionary- and rule-based text mining for target identification and functional enrichment analysis. Extract genes and proteins from PubMed literature, perform GO/MeSH/Pathway enrichment, and build interaction networks.

PubMed Mining

Full-text and abstract mining from MEDLINE

Target Identification

Genes, proteins via dictionary and rule-based NLP

Enrichment Analysis

Gene, GO, MeSH, Pathway, PPI enrichment

PPI Networks

Interactive Cytoscape.js network visualization

Quick Access

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Run SciMiner

Submit a new text mining query
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Post-Mining Analysis

Enrichment and pathway analysis
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Merge Queries

Combine results from multiple queries
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Completed

View past queries and analyses

All Versions

SciMiner Classic

Original production

Stable

SciMiner 1.1

Enhanced Perl/CGI

Current

SciMiner 2.0

Python/React platform

Development