SciMiner Result Report Page

Congratulation! Your query with SciMiner has been successfully completed. Your query and search options were

Query ID #	16
User name	Junguk Hur
Email	juhur@umich.edu
Query name	ALS INF
Query string
PMID count #	168
Score threshold	0.1
Other	Remove_phenotype_gene, Use_symbol_length_option, Always_accept_symbol_longer_than: 6

SciMiner has analyzed (168) articles. [Documents Summary] [PMIDs]
Here is the summary of identified targets. To view the final list of merged targets, click the number in the Unique targets/Merged cell or Full result HTML in the section below. If you are interested in the raw data files, they are available at the bottom of this page.

Here are the top 10 most frequently found targets from your query. They are sorted primarily by the number of paper and then by the number of occurrence.

	Identified Targets
	Before filtering	After filtering	Unique targets
Symbol-based mining	10058	7513	416
Name-based mining	2990	2715	298
Merged	13048	10228	555 (detail)

Rank	HUGO	Symbol	Target Name	#Occur	#Paper
1	11179	SOD1	superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))	1372	62
2	11892	TNF	tumor necrosis factor (TNF superfamily, member 2)	475	43
3	7873	NOS2A	nitric oxide synthase 2A (inducible, hepatocytes)	172	34
4	620	APP	amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease)	156	29
5	9605	PTGS2	prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	1448	26
6	6018	IL6	interleukin 6 (interferon, beta 2)	287	25
7	4235	GFAP	glial fibrillary acidic protein	95	22
8	5992	IL1B	interleukin 1, beta	153	18
9	5438	IFNG	interferon, gamma	55	16
10	1504	CASP3	caspase 3, apoptosis-related cysteine peptidase	52	14

Full result (HTML, TXT, EXCEL)

Here are the MeSH terms that are highly enriched in your query(corpus) when compared to all other PubMed documents. The comparison was done by Fishers Exact test. The default significance level is 0.05 and any p-value smaller than 0.05 is shown in red. Use the EXCEL file below to sort by enrichment fold (t-ratio / b-ratio).

Corpus size	168	Background(MedLine)	17760657	Switch table detail

Rank	MeSH Term	t+	t-	b+	b-	p-value	t-ratio	b-ratio	enrichment folds
1	Amyotrophic Lateral Sclerosis	91	77	8337	17752320	2.64e-254	0.54	0.00	1153.9
2	Inflammation	65	103	55717	17704940	4.39e-116	0.39	0.00	123.3
3	Neurodegenerative Diseases	28	140	5168	17755489	6.23e-68	0.17	0.00	572.8
4	Superoxide Dismutase	35	133	26196	17734461	1.12e-63	0.21	0.00	141.2
5	Microglia	22	146	5795	17754862	3.80e-50	0.13	0.00	401.3
6	Spinal Cord	31	137	59022	17701635	5.85e-44	0.18	0.00	55.5
7	Neuroprotective Agents	20	148	12617	17748040	4.00e-38	0.12	0.00	167.6
8	Motor Neurons	22	146	29190	17731467	8.56e-35	0.13	0.00	79.7
9	Mice, Transgenic	24	144	45005	17715652	2.55e-34	0.14	0.00	56.4
10	Disease Models, Animal	31	137	130525	17630132	1.65e-33	0.18	0.01	25.1

Full result (HTML, TXT, EXCEL)

Here are the raw result files of SciMiner mining. If you are interested in seeing all the individual identification results, these files are useful to you. These files can also be useful in your generating customary filters. For example, check the Filtered out results, to see any targets you are quite certain that should be included in the result. Put such targets into your INCLUDE filter list and run the same query again.

These files are usually large and we recommend you save these files and load them in a text editor or in EXCEL. Check File Format of these files.

	Before filtering	After filtering	Filtered out	Unique targets
Symbol-based mining	2MB	1MB	857KB	37KB
Name-based mining	890KB	801KB	89KB	30KB
Merged	3MB	2MB	55KB	55KB