Document Information


PMID 15668976  (  )
Title Gene expression profile of spinal motor neurons in sporadic amyotrophic lateral sclerosis.
Abstract The causative pathomechanism of sporadic amyotrophic lateral sclerosis (ALS) is not clearly understood. Using microarray technology combined with laser-captured microdissection, gene expression profiles of degenerating spinal motor neurons isolated from autopsied patients with sporadic ALS were examined. Gene expression was quantitatively assessed by real-time reverse transcription polymerase chain reaction and in situ hybridization. Spinal motor neurons showed a distinct gene expression profile from the whole spinal ventral horn. Three percent of genes examined were downregulated, and 1% were upregulated in motor neurons. Downregulated genes included those associated with cytoskeleton/axonal transport, transcription, and cell surface antigens/receptors, such as dynactin, microtubule-associated proteins, and early growth response 3 (EGR3). In contrast, cell death-associated genes were mostly upregulated. Promoters for cell death pathway, death receptor 5, cyclins A1 and C, and caspases-1, -3, and -9, were upregulated, whereas cell death inhibitors, acetyl-CoA transporter, and NF-kappaB were also upregulated. Moreover, neuroprotective neurotrophic factors such as ciliary neurotrophic factor (CNTF), Hepatocyte growth factor (HGF), and glial cell line-derived neurotrophic factor were upregulated. Inflammation-related genes, such as those belonging to the cytokine family, were not, however, significantly upregulated in either motor neurons or ventral horns. The motor neuron-specific gene expression profile in sporadic ALS can provide direct information on the genes leading to neurodegeneration and neuronal death and are helpful for developing new therapeutic strategies. Nagoya, Japan.

NOTE: Color highlight is limited to the abstract and SciMiner text-mining mode. If you see much more identified targets below from "Targets by SciMiner Summary" and "Targets by SciMiner Full list", they may have been identified from the full text.



Targets by SciMiner Summary

HUGO ID Symbol Target Name #Occur ActualStr
2169CNTFciliary neurotrophic factor2CNTF | ciliary neurotrophic factor |
4893HGFhepatocyte growth factor (hepapoietin A; scatter factor)2hepatocyte growth factor | HGF |
3240EGR3early growth response 32early growth response 3 | EGR3 |
7794NFKB1nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)1NF-kappaB |
11905TNFRSF10Btumor necrosis factor receptor superfamily, member 10b1death receptor 5 |
4232GDNFglial cell derived neurotrophic factor1glial cell line derived neurotrophic factor |

 


Targets by SciMiner Full list

HUGO ID Symbol Name ActualStr Score FlankingText
3240EGR3early growth response 3EGR32.5as dynactin microtubule-associated proteins and early growth response 3 (EGR3) EGR3
7794NFKB1nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)NF-kappaB0.0-9 were upregulated whereas cell death inhibitors acetyl-CoA transporter and NF-kappaB were also upregulated
2169CNTFciliary neurotrophic factorCNTF1.9Moreover neuroprotective neurotrophic factors such as ciliary neurotrophic factor (CNTF), CNTF Hepatocyte growth factor (HGF), HGF and glial cell line-derived neurotrophic
4893HGFhepatocyte growth factor (hepapoietin A; scatter factor)HGF1.2as ciliary neurotrophic factor (CNTF), CNTF Hepatocyte growth factor (HGF), HGF and glial cell line-derived neurotrophic factor were upregulated
3240EGR3early growth response 3early growth response 31.0downregulated genes included those associated with cytoskeleton/axonal transport transcription and cell surface antigens/receptors such as dynactin microtubule associated proteins and early growth response 3 egr3 .
11905TNFRSF10Btumor necrosis factor receptor superfamily, member 10bdeath receptor 51.0promoters for cell death pathway death receptor 5 cyclins a1 and c and caspases 1 3 and 9 were upregulated whereas cell death inhibitors acetyl coa transporter and nf kappab were also upregulated.
2169CNTFciliary neurotrophic factorciliary neurotrophic factor1.0moreover neuroprotective neurotrophic factors such as ciliary neurotrophic factor cntf hepatocyte growth factor hgf and glial cell line derived neurotrophic factor were upregulated.
4893HGFhepatocyte growth factor (hepapoietin A; scatter factor)hepatocyte growth factor1.0moreover neuroprotective neurotrophic factors such as ciliary neurotrophic factor cntf hepatocyte growth factor hgf and glial cell line derived neurotrophic factor were upregulated.
4232GDNFglial cell derived neurotrophic factorglial cell line derived neurotrophic factor1.0moreover neuroprotective neurotrophic factors such as ciliary neurotrophic factor cntf hepatocyte growth factor hgf and glial cell line derived neurotrophic factor were upregulated.