Welcome to RichStudio v0.1.4.

Upload from differential expression geneset (DEG) or enrichment result. Supports kappa clustering and multiple visualizations.

Note

This web application is functional, but some features are still under development and may not work fully as expected.

You can follow updates or report issues on GitHub:

hurlab/richStudio

File upload
Text input
Upload DEG sets

Accepted formats: .txt, .csv, .tsv

Select files

Browse...

Genes can be separated by any non-alphanumeric character

Text Input

Name

Enrich

Select DEG sets to enrich

Select annotation source

Select keytype

Select ontology

Select species

DEG sets
Enrichment Results
Uploaded files

Double-click on any cell to change its value.

Select DEG set

Export as

Download

Select enrichment result

Export as

Download

File upload
Text input
Load enrichment result

Accepted formats: .txt, .csv, .tsv

Select files

Browse...

This functionality is currently not available, but will be supported in the future.

Text Input

Name

Available enrichment results

You can rename any enrichment result by double-clicking on the relevant cell.

Enrichment Result Visualization

Table View

Select enrichment result to view

Table View

Bar Plot

Select enrichment result to view

View rich score or p-value?

View Padj or Pvalue?

P-value cutoff

Number of terms to display

Bar Plot

Dot Plot

Select enrichment result to view

View Padj or Pvalue?

P-value cutoff

Number of terms to display

Dot Plot

Network

Select enrichment result to view

View Padj or Pvalue?

P-value cutoff

Number of terms to display

Select enrichment results

Select top terms by

P-value cutoff

Number of terms per result to display

Enrichment results in heatmap

Double click any cell to change its value.

Select enrichment result

Select top terms by

Title

Delete

Select enrichment result

Select terms to delete

Top Terms Heatmap

Custom Terms Heatmap

File upload
Text input
Upload enrichment results

Accepted formats: .txt, .csv, .tsv

Select files

Browse...

This functionality is currently not available, but will be supported in the future.

Text Input

Name

Kappa clustering
Cluster

Select enrichment results to cluster

Name

Cluster by

Cutoff

Overlap

Min size

Double-click on any cell to change its value.

Select enrichment result

Export as

Download

Select cluster result

Export as

Download

File upload
Text input
Load cluster result

Accepted formats: .txt, .csv, .tsv (Not currently supported)

Select files

Browse...

This functionality is currently not available, but will be supported in the future.

Text Input

Name

Available cluster results

You can rename any cluster result by double-clicking on the relevant cell.

Cluster Result Visualization

Heatmap
Cluster info

Cluster Heatmap

Select cluster result to view comprehensive heatmap displaying values for each cluster

Select cluster result

Select value to show

Calculate value by

Cluster Heatmap

Term Heatmap

Select individual clusters to view heatmap of values for each term in cluster

Select individual clusters

Select value to show

Term Heatmap

Detailed Cluster Info

View and export individual term data for cluster results

Select cluster result

Export as

Download