| Query | Type | Family Accession | Family ID | miRBase ID1 | miRBase ID2 | # of members |
| mir-17 | family | MIPF0000001 | mir-17 | . | . | 123 |
CLUSTAL 2.1 multiple sequence alignment
hsa-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
mdo-miR-17-3p ---ACUGCAGUGAAGGCACUUGUA--
gga-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
ggo-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
lca-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
age-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
ppa-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
ppy-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
ptr-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
mml-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
sla-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
lla-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
mne-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
xtr-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
bta-miR-17-3p ---ACUGCAGUGAAGGCACUUGU---
mmu-miR-17-3p ---ACUGCAGUGAGGGCACUUGUA--
dre-miR-20a* ---ACUGCAGUGUGAGCACUUGAAG-
rno-miR-20b* ---ACUGCAGUGUGAGCACUUCUG--
dre-miR-17a* ---ACUGCAGUGGAGGCACUUCUAG-
rno-miR-20a* ---ACUGCAUUACGAGCACUUACA--
xtr-miR-20a* ---ACUGCAUAAUGAGCACUUAAA--
dre-miR-17a CAAAGUGCUUACAGUGCAGGUA----
fru-miR-17 CAAAGUGCUUACAGUGCAGGUA----
tni-miR-17 CAAAGUGCUUACAGUGCAGGUA----
hsa-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
mmu-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
rno-miR-17 CAAAGUGCUUACAGUGCAGGUAGU--
gga-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
ggo-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
lca-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
age-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
ppa-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
ppy-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
ptr-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
mml-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
sla-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
lla-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
mne-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
xtr-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
bta-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
mdo-miR-17-5p CAAAGUGCUUACAGUGCAGGUAGU--
mmu-miR-20b CAAAGUGCUCAUAGUGCAGGUA----
rno-miR-20b CAAAGUGCUCAUAGUGCAGGU-----
xla-miR-20 CAAAGUGCUCAUAGUGCAGGUAG---
gga-miR-20b CAAAGUGCUCAUAGUGCAGGUAG---
hsa-miR-20b CAAAGUGCUCAUAGUGCAGGUAG---
xtr-miR-20b CAAAGUGCUCAUAGUGCAGGUAG---
dre-miR-20b CAAAGUGCUCACAGUGCAGGUAG---
bta-miR-20b CAAAGUGCUCACAGUGCAGGUA----
mmu-miR-106a CAAAGUGCUAACAGUGCAGGUA----
lla-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
mne-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
sla-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
mml-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
ptr-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
ppy-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
ppa-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
age-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
lca-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
ggo-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
ssc-miR-20 UAAAGUGCUUAUAGUGCAGGUA----
mdo-miR-20 UAAAGUGCUUAUAGUGCAGGUAG---
xtr-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
bta-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
tni-miR-20 UAAAGUGCUUAUAGUGCAGGUAG---
fru-miR-20 UAAAGUGCUUAUAGUGCAGGUAG---
dre-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
gga-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
rno-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
mmu-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
hsa-miR-20a UAAAGUGCUUAUAGUGCAGGUAG---
hsa-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
ssc-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
ggo-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
age-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
ppa-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
mml-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
ppy-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
ptr-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
sla-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
mne-miR-106a AAAAGUGCUUACAGUGCAGGUAGC--
gga-miR-106 AAAAGUGCUUACAGUGCAGGUA----
bta-miR-106 AAAAGUGCUUACAGUGCAGGUA----
xtr-miR-106 AAAAGUGCUUAUAGUGCAGGUAGA--
mmu-miR-106b UAAAGUGCUGACAGUGCAGAU-----
hsa-miR-106b UAAAGUGCUGACAGUGCAGAU-----
rno-miR-106b UAAAGUGCUGACAGUGCAGAU-----
ggo-miR-106b UAAAGUGCUGACAGUGCAGAU-----
age-miR-106b UAAAGUGCUGACAGUGCAGAU-----
ppa-miR-106b UAAAGUGCUGACAGUGCAGAU-----
ppy-miR-106b UAAAGUGCUGACAGUGCAGAU-----
ptr-miR-106b UAAAGUGCUGACAGUGCAGAU-----
mml-miR-106b UAAAGUGCUGACAGUGCAGAU-----
sla-miR-106b UAAAGUGCUGACAGUGCAGAU-----
lla-miR-106b UAAAGUGCUGACAGUGCAGAU-----
mne-miR-106b UAAAGUGCUGACAGUGCAGAU-----
hsa-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
ggo-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
age-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
ppa-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
ppy-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
ptr-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
mml-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
sla-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
lla-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
mne-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
mdo-miR-93 -AAAGUGCUGUUCGUGCAGGUAG---
xtr-miR-93b UCAAGUGCUGUUCGUGCAGGUAG---
mmu-miR-93 CAAAGUGCUGUUCGUGCAGGUAG---
bta-miR-93 CAAAGUGCUGUUCGUGCAGGUA----
rno-miR-93 CAAAGUGCUGUUCGUGCAGGUAG---
xtr-miR-93a CAAAGUGCUGUUCGUGCAGGUAG---
dre-miR-93 AAAAGUGCUGUUUGUGCAGGUA----
hsa-miR-18a UAAGGUGCAUCUAGUGCAGAUA----
mmu-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
rno-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
gga-miR-18a UAAGGUGCAUCUAGUGCAGAUA----
dre-miR-18a UAAGGUGCAUCUAGUGCAGAUA----
ssc-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
ggo-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
lca-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
age-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
ppa-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
ppy-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
ptr-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
mml-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
sla-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
lla-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
mne-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
fru-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
tni-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
bta-miR-18a UAAGGUGCAUCUAGUGCAGAUA----
xtr-miR-18a UAAGGUGCAUCUAGUGCAGAUA----
mdo-miR-18 UAAGGUGCAUCUAGUGCAGAUA----
gga-miR-18b UAAGGUGCAUCUAGUGCAGUUA----
dre-miR-18c UAAGGUGCAUCUUGUGUAGUUA----
hsa-miR-18b UAAGGUGCAUCUAGUGCAGUUA----
bta-miR-18b UAAGGUGCAUCUAGUGCAGUUA----
xla-miR-18 UAAGGUGCAUCUAGUGCAGUUAG---
xtr-miR-18b UAAGGUGCAUCUAGUGCAGUUAG---
dre-miR-18b UAAGGUGCAUUUAGUGCAGAUA----
hsa-miR-18a* ---ACUGCCCUAAGUGCUCCUUCU--
dre-miR-18b* ----CUGCCCUAAGUGCCCCUUCUGG
*** * *
CLUSTAL 2.1 multiple sequence alignment
mmu-mir-18 ----------------------------------UGCGUGCUUUUUGUUCUAAGGUGCAU
rno-mir-18 ----------------------------------UGCGUGCUUUUUGUUCUAAGGUGCAU
ssc-mir-18 -------------------------------------GUGCUUUUUGUUCUAAGGUGCAU
gga-mir-18a -------------------------------------GUGCUUUUUGUACUAAGGUGCAU
xtr-mir-18a -------------------------------------GUGCUUUUUGUCCUAAGGUGCAU
mdo-mir-18 --------------------------------------------UUGUUCUAAGGUGCAU
hsa-mir-18a ---------------------------------------------UGUUCUAAGGUGCAU
ggo-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
fru-mir-18 --------------------------------------------UUGUGCUAAGGUGCAU
tni-mir-18 --------------------------------------------UUGUGCUAAGGUGCAU
dre-mir-18b --------------------------------------UACUGCUUAUGCUAAGGUGCAU
dre-mir-18a ----------------------------------------GGCUUUGUGCUAAGGUGCAU
lca-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
age-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
ppa-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
ppy-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
ptr-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
mml-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
sla-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
lla-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
mne-mir-18 ---------------------------------------------UGUUCUAAGGUGCAU
bta-mir-18a ---------------------------------------------UGUUCUAAGGUGCAU
gga-mir-18b ------------------------------------CGUGGUCCUUGUGUUAAGGUGCAU
bta-mir-18b -------------------------------------------CUUGUGUUAAGGUGCAU
xla-mir-18 ------------------------------------------CCUUGUGUUAAGGUGCAU
xtr-mir-18b ------------------------------------------CCUUGUGUUAAGGUGCAU
hsa-mir-18b ---------------------------------------------UGUGUUAAGGUGCAU
dre-mir-18c ----------------------------------------GCCUUCCUGCUAAGGUGCAU
rno-mir-17 -------------------------------------GUCAGGAUAAUGUCAAAGUGCUU
lla-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
mne-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
bta-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
sla-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
mml-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
ptr-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
ppa-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
age-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
ggo-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
lca-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
hsa-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
ppy-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
mdo-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
mmu-mir-17 -------------------------------------GUCAGAAUAAUGUCAAAGUGCUU
gga-mir-17 -------------------------------------GUCAGAGUAAUGUCAAAGUGCUU
xtr-mir-17 ------------------------------------GUCAAGAGUAAUGUCAAAGUGCUU
mmu-mir-20a ------------------------GUGUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUU
rno-mir-20a -----------------------------------CAGCUUCUGUAGCACUAAAGUGCUU
gga-mir-20a --------------------------------UGACAGCUCUUGUAGCACUAAAGUGCUU
mdo-mir-20 ---------------------------UGAAAGGACAGCUUUUGUAGCACUAAAGUGCUU
lca-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
hsa-mir-20a -------------------------------------------GUAGCACUAAAGUGCUU
ssc-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
ggo-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
age-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
ppa-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
ppy-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
ptr-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
mml-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
sla-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
lla-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
mne-mir-20 -------------------------------------------GUAGCACUAAAGUGCUU
bta-mir-20a -------------------------------------------GUAGCACUAAAGUGCUU
xtr-mir-20a -------------------------------------GCUAAAGUGGUGCUAAAGUGCUU
dre-mir-20a UCUUAAAUAAAUCUCCUAAUGUUGCAGUUGUGUUAGAGUUUCAGCAGUGCUAAAGUGCUU
fru-mir-20 ------------------------------------------AGCAGUAUUAAAGUGCUU
tni-mir-20 -------------------------------------------GCAGUAUUAAAGUGCUU
mmu-mir-20b ---------------------------------------CCUAGUAGUGCCAAAGUGCUC
rno-mir-20b -------------------------------------------GUAGUGCCAAAGUGCUC
xla-mir-20 -------------------------------------------GCAGUUCCAAAGUGCUC
xtr-mir-20b -------------------------------------------GCAGUUCCAAAGUGCUC
gga-mir-20b ----------------------------------------CUAGCAGUAUCAAAGUGCUC
hsa-mir-20b ---------------------------------------------AGUACCAAAGUGCUC
bta-mir-20b ---------------------------------------------AGUACCAAAGUGCUC
dre-mir-20b -------------------------------GAGUUUGUCCUGGCAGUUCCAAAGUGCUC
mmu-mir-106b ---------------------------------------CCUGCUGGGACUAAAGUGCUG
rno-mir-106b ---------------------------------------CCUGCUGGGACUAAAGUGCUG
hsa-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
ggo-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
age-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
ppa-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
ppy-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
ptr-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
sla-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
mml-mir-106b ---------------------------------------CCUGCUGGGGCUAAAGUGCUG
mne-mir-106b ---------------------------------------CCUGCUGGGGCUAAAGUGCUG
lla-mir-106b ---------------------------------------CCUGCCGGGGCUAAAGUGCUG
hsa-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
ptr-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
sla-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
ggo-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
ppa-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
ppy-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
age-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
lla-mir-93 ----------------------------------------CUCGGGGCUCCAAAGUGCUG
mml-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
mne-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
mmu-mir-93 ------------------------------------AGUCAUGGGGGCUCCAAAGUGCUG
rno-mir-93 ------------------------------------AGUCAUGGGGGCUCCAAAGUGCUG
bta-mir-93 ----------------------------------------CUGGGGGCUCCAAAGUGCUG
mdo-mir-93 -----------------------------------AGUCUUGGGGGGCUCCAAAGUGCUG
xtr-mir-93a ------------------------------------------AUGGGCUUCAAAGUGCUG
xtr-mir-93b -----------------------------------------------CUUCAA-GUGCUG
dre-mir-93 -----------------------------------------GUGUGUGUUAAAAGUGCUG
ggo-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
age-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
ppa-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
mml-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
ppy-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
ptr-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
sla-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
mne-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
bta-mir-106 --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
ssc-mir-106a --------------------------------------CCUUGGCCGUGUAAAAGUGCUU
hsa-mir-106a --------------------------------------CCUUGGCCAUGUAAAAGUGCUU
mmu-mir-106a ----------------------------------------------AUGUCAAAGUGCUA
gga-mir-106 -------------------------------------CCUUGAGUUGUGCAAAAGUGCUU
xtr-mir-106 -----------------------------------------------UGCAAAAGUGCUU
fru-mir-17-1 -------------------------------------GUCUGUGUAUUGCCAAAGUGCUU
tni-mir-17-1 -------------------------------------GUCUGUGUAUUGCCAAAGUGCUU
dre-mir-17a-1 ----------GGACUUUCUUGAGUGGACUUGGUUGGUGUCAAUGUAUUGUCAAAGUGCUU
dre-mir-17a-2 -------------------------------------GUCACUGUAGUGUCAAAGUGCUU
fru-mir-17-2 -------------------------------------GUCAAAGUAGUGUCAAAGUGCUU
tni-mir-17-2 -------------------------------------GUCACCGUAGUGUCAAAGUGCUU
** ****
mmu-mir-18 CUAGUGCAGAUAGUGAAGUAGACUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAG
rno-mir-18 CUAGUGCAGAUAGUGAAGUAGACUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAG
ssc-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAG
gga-mir-18a CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAG
xtr-mir-18a CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAA
mdo-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
hsa-mir-18a CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
ggo-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
fru-mir-18 CUAGUGCAGAUAGUGAAAUAGACUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCAUAAG
tni-mir-18 CUAGUGCAGAUAGUGAAAUAGACUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCAUAAG
dre-mir-18b UUAGUGCAGAUAGUGAAAUAGACUAGCACCUACUGCCCUAAGUGCCCCUUCUGGCAUAAG
dre-mir-18a CUAGUGCAGAUAGUGAAGUAGACUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCACGAG
lca-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
age-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
ppa-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
ppy-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
ptr-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
mml-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
sla-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
lla-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
mne-mir-18 CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
bta-mir-18a CUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA----
gga-mir-18b CUAGUGCAGUUAGUGACGUAGCGUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAG
bta-mir-18b CUAGUGCAGUUAGUGAAGCAGCUCAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACA--
xla-mir-18 CUAGUGCAGUUAGUGACAUAGCGUAGCAUCUACUGCCCUAAAUGCUCCUUUUGGCACAGG
xtr-mir-18b CUAGUGCAGUUAGUGACAUAGUGUAGCAUCUACUGCCCUAAAUGCUCCUUUUGGCACAGG
hsa-mir-18b CUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCA----
dre-mir-18c CUUGUGUAGUUAGUGAAGUAGUCUAGUAUCUACUGCGCUAGAUGUUCCUUUUGGCAGGAG
rno-mir-17 ACAGUGCAGGUAGUGGUGUGU----GCAUCUACUGCAGUGAAGGCAC-UUGUGGCAUUGU
lla-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
mne-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
bta-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
sla-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
mml-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
ptr-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
ppa-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
age-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
ggo-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
lca-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
hsa-mir-17 ACAGUGCAGGUAGUGAUAUG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
ppy-mir-17 ACAGUGCAGGUAGUGAUACG---U-GCAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
mdo-mir-17 ACAGUGCAGGUAGUGAUAUG---UAGAAUCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
mmu-mir-17 ACAGUGCAGGUAGUGAUGUG---U-GCAUCUACUGCAGUGAGGGCAC-UUGUAGCAUUAU
gga-mir-17 ACAGUGCAGGUAGUGAUAUA---UAGAACCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
xtr-mir-17 ACAGUGCAGGUAGUGAUUUAA--CAGAACCUACUGCAGUGAAGGCAC-UUGUAGCAUUAU
mmu-mir-20a AUAGUGCAGGUAGUGUGUA----GCCAU-CUACUGCAUUACGAGCAC-UUAAAGUACUGC
rno-mir-20a AUAGUGCAGGUAGUGUGUC----GUCAU-CUACUGCAUUACGAGCAC-UUACAGUACUGC
gga-mir-20a AUAGUGCAGGUAGUGUUCA----CUAAU-CUACUGCAUUAUAAGCAC-UUAAAGUACUGC
mdo-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUGAAGUACUGC
lca-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUCAUGAGCAC-UUAAAGUACUGC
hsa-mir-20a AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
ssc-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
ggo-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
age-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
ppa-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
ppy-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
ptr-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
mml-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
sla-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
lla-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
mne-mir-20 AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
bta-mir-20a AUAGUGCAGGUAGUGUUUA----GUUAU-CUACUGCAUUAUGAGCAC-UUAAAGUACUGC
xtr-mir-20a AUAGUGCAGGUAGUUUUUCU---GUAUU-CUACUGCAUAAUGAGCAC-UUAAAGUACUCC
dre-mir-20a AUAGUGCAGGUAGUAUUUCU---GUCAU-CUACUGCAGUGUGAGCAC-UUGAAGUACUUC
fru-mir-20 AUAGUGCAGGUAGUUA-CUG---AUGGU-CUACUGCAGUGUGAGCAC-UUCUAGUACUUC
tni-mir-20 AUAGUGCAGGUAGUUUUCUC---AGGGU-CUACUGCAGUAUGAGCAC-UUCUAGUACUUC
mmu-mir-20b AUAGUGCAGGUAGUUUUUAUA--CCACU-CUACUGCAGUGUGAGCAC-UUCUAGUACUCC
rno-mir-20b AUAGUGCAGGUAGGUUUUGCU--GCACU-CUACUGCAGUGUGAGCAC-UUCUGGUACUC-
xla-mir-20 AUAGUGCAGGUAGUUGUAUUC--AUGUU-CUACUGUAAUAUGGGCAC-UUACAGUACUGC
xtr-mir-20b AUAGUGCAGGUAGUUGUAUUG--AUGUU-CUACUGUAAUAUGGGCAC-UUACAGUACUGC
gga-mir-20b AUAGUGCAGGUAGCUUGGCAU--UGGAC-CUACUGUAAUGUGGGCAC-UUACAGUACUGU
hsa-mir-20b AUAGUGCAGGUAGUUUUGGCA--UGACU-CUACUGUAGUAUGGGCAC-UUCCAGUACU--
bta-mir-20b ACAGUGCAGGUAGUUUUGGCA--GCGCU-CUACUGUAGUGUGGGCAC-UUCCAGUACU--
dre-mir-20b ACAGUGCAGGUAGUGCCAG----UGGAU-CUACUGCAAUGUCUGCAC-UUCAAGUAUUGC
mmu-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCUGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
rno-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCUGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
hsa-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
ggo-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
age-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
ppa-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
ppy-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
ptr-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
sla-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
mml-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
mne-mir-106b ACAGUGCAGAUAGUGGUCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
lla-mir-106b ACAGUGCAGAUAGUG-UCCUC--UCCGUGCUACCGCACUGUGGGUAC-UUGCUGCUCCAG
hsa-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCCAACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
ptr-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCCAACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
sla-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCCAACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
ggo-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCCGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
ppa-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCCGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
ppy-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCCGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
age-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCUGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
lla-mir-93 UUCGUGCAGGUAGUGUGAUUA--CCUGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
mml-mir-93 UUCGUGCAGGUAGUGUGAUUA--ACCGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
mne-mir-93 UUCGUGCAGGUAGUGUGAUUA--ACCGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
mmu-mir-93 UUCGUGCAGGUAGUGUAAUUA--CCUGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
rno-mir-93 UUCGUGCAGGUAGUGCA-UUG--CCUGACCUACUGCUGAGCUAGCAC-UUCCCGAGCCCC
bta-mir-93 UUCGUGCAGGUAGUGUGAUCA--CCUGACCUACUGCUGAGCCAGCAC-UUCCCGAGCCCC
mdo-mir-93 UUCGUGCAGGUAGUGUGAUAA--CCUGACCUACUGCUGAGCUAGCAC-UUCCAGAGCCCC
xtr-mir-93a UUCGUGCAGGUAGCUUAAU-A--ACAGACCUACUGCAUGGGCGGCAC-UUCCCAAGCCC-
xtr-mir-93b UUCGUGCAGGUAGCUUAAU-A--ACAGACCUACUGCAUGGGCGGCAC-UUCCCAAG----
dre-mir-93 UUUGUGCAGGUAGUGUGUU------UCCUCUACUGUAGGAGCAGCAC-UUCACAACACAC
ggo-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
age-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
ppa-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
mml-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
ppy-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
ptr-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
sla-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
mne-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
bta-mir-106 ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
ssc-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGCAAGCAC-UUCUUACAUUAC
hsa-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGAUCUACUGCAAUGUAAGCAC-UUCUUACAUUAC
mmu-mir-106a ACAGUGCAGGUAGCUUUUU-----GAGUUCUACUGCAGUGCCAGCAC-UUCUUACAU---
gga-mir-106 ACAGUGCAGGUAGAGCUCA------GCACCUACUGCAGUAUAAGCAC-UUCUGGCAUGAC
xtr-mir-106 AUAGUGCAGGUAGAAUUUA------A-ACCUACUGCACCAUAAGCAC-UUCCUGCAUC--
fru-mir-17-1 ACAGUGCAGGUAGUUCUAU-G--UGACACCUACUGCAAUGGAGGCAC-UUACAGCAGUAC
tni-mir-17-1 ACAGUGCAGGUAGUACUAU-G--UAACACCUACUGCAAUGGAGGCAC-UUACAGCAGUAC
dre-mir-17a-1 ACAGUGCAGGUAGUAUUAU-G--GAAUAUCUACUGCAGUGGAGGCAC-UUCUAGCAAUAC
dre-mir-17a-2 ACAGUGCAGGUAGUUCAAU-A--UAA--UCUACUGCAGUGGAGGCAC-UUCAAGCUUUAC
fru-mir-17-2 ACAGUGCAGGUAGUUUGAU-----GACAUCUACUGCAGUGAAGGCAC-UUUCAGCGCUAU
tni-mir-17-2 ACAGUGCAGGUAGUUAAAA-----GAAAUCUACUGCAGUGAAGGCAC-UUUCAGCACUAU
*** ** *** **** * * * **
mmu-mir-18 AAGUUAUGUC----------------------------
rno-mir-18 AAGUUAUGUC----------------------------
ssc-mir-18 AAGUUAUGU-----------------------------
gga-mir-18a AAGUUAUGUC----------------------------
xtr-mir-18a AAGU----------------------------------
mdo-mir-18 --------------------------------------
hsa-mir-18a --------------------------------------
ggo-mir-18 --------------------------------------
fru-mir-18 --------------------------------------
tni-mir-18 --------------------------------------
dre-mir-18b GGGCU---------------------------------
dre-mir-18a GGU-----------------------------------
lca-mir-18 --------------------------------------
age-mir-18 --------------------------------------
ppa-mir-18 --------------------------------------
ppy-mir-18 --------------------------------------
ptr-mir-18 --------------------------------------
mml-mir-18 --------------------------------------
sla-mir-18 --------------------------------------
lla-mir-18 --------------------------------------
mne-mir-18 --------------------------------------
bta-mir-18a --------------------------------------
gga-mir-18b --------------------------------------
bta-mir-18b --------------------------------------
xla-mir-18 G-------------------------------------
xtr-mir-18b --------------------------------------
hsa-mir-18b --------------------------------------
dre-mir-18c UAGCU---------------------------------
rno-mir-17 GCUGAC--------------------------------
lla-mir-17 GGUGAC--------------------------------
mne-mir-17 GGUGAC--------------------------------
bta-mir-17 GGUGAC--------------------------------
sla-mir-17 GGUGAC--------------------------------
mml-mir-17 GGUGAC--------------------------------
ptr-mir-17 GGUGAC--------------------------------
ppa-mir-17 GGUGAC--------------------------------
age-mir-17 GGUGAC--------------------------------
ggo-mir-17 GGUGAC--------------------------------
lca-mir-17 GGUGAC--------------------------------
hsa-mir-17 GGUGAC--------------------------------
ppy-mir-17 GGUGAC--------------------------------
mdo-mir-17 AGUGAC--------------------------------
mmu-mir-17 GCUGAC--------------------------------
gga-mir-17 GUUGAC--------------------------------
xtr-mir-17 AUUGAC--------------------------------
mmu-mir-20a CAGCUGUAGAACUCCAG---------------------
rno-mir-20a CAGCUG--------------------------------
gga-mir-20a UAGCUGUAGAACUACA----------------------
mdo-mir-20 UAGCUGUAGAACUAC-----------------------
lca-mir-20 --------------------------------------
hsa-mir-20a --------------------------------------
ssc-mir-20 --------------------------------------
ggo-mir-20 --------------------------------------
age-mir-20 --------------------------------------
ppa-mir-20 --------------------------------------
ppy-mir-20 --------------------------------------
ptr-mir-20 --------------------------------------
mml-mir-20 --------------------------------------
sla-mir-20 --------------------------------------
lla-mir-20 --------------------------------------
mne-mir-20 --------------------------------------
bta-mir-20a --------------------------------------
xtr-mir-20a UAGCUG--------------------------------
dre-mir-20a UAGCUUAAUGCGUCUGGGAUCCGAAGAUUUCUGCUAGA
fru-mir-20 UAGAUGCA------------------------------
tni-mir-20 U-------------------------------------
mmu-mir-20b UGG-----------------------------------
rno-mir-20b --------------------------------------
xla-mir-20 U-------------------------------------
xtr-mir-20b U-------------------------------------
gga-mir-20b UAGAUAAAG-----------------------------
hsa-mir-20b --------------------------------------
bta-mir-20b --------------------------------------
dre-mir-20b CGGACGCCUUC---------------------------
mmu-mir-106b CAGG----------------------------------
rno-mir-106b CAGG----------------------------------
hsa-mir-106b CAGG----------------------------------
ggo-mir-106b CAGG----------------------------------
age-mir-106b CAGG----------------------------------
ppa-mir-106b CAGG----------------------------------
ppy-mir-106b CAGG----------------------------------
ptr-mir-106b CAGG----------------------------------
sla-mir-106b CAGG----------------------------------
mml-mir-106b CAGG----------------------------------
mne-mir-106b CAGG----------------------------------
lla-mir-106b CAGG----------------------------------
hsa-mir-93 CGG-----------------------------------
ptr-mir-93 CGG-----------------------------------
sla-mir-93 CGG-----------------------------------
ggo-mir-93 CGG-----------------------------------
ppa-mir-93 CGG-----------------------------------
ppy-mir-93 CGG-----------------------------------
age-mir-93 CGG-----------------------------------
lla-mir-93 CGG-----------------------------------
mml-mir-93 CAG-----------------------------------
mne-mir-93 CAG-----------------------------------
mmu-mir-93 CAGGACA-------------------------------
rno-mir-93 CAGGACA-------------------------------
bta-mir-93 --------------------------------------
mdo-mir-93 UGGGACA-------------------------------
xtr-mir-93a --------------------------------------
xtr-mir-93b --------------------------------------
dre-mir-93 AC------------------------------------
ggo-mir-106a CAUGG---------------------------------
age-mir-106a CAUGG---------------------------------
ppa-mir-106a CAUGG---------------------------------
mml-mir-106a CAUGG---------------------------------
ppy-mir-106a CAUGG---------------------------------
ptr-mir-106a CAUGG---------------------------------
sla-mir-106a CAUGG---------------------------------
mne-mir-106a CAUGG---------------------------------
bta-mir-106 CAUGG---------------------------------
ssc-mir-106a CAUGG---------------------------------
hsa-mir-106a CAUGG---------------------------------
mmu-mir-106a --------------------------------------
gga-mir-106 CGUGG---------------------------------
xtr-mir-106 --------------------------------------
fru-mir-17-1 UCUUGAC-------------------------------
tni-mir-17-1 UCUUGAC-------------------------------
dre-mir-17a-1 ACUUGACCAUUUUAACCUUCCUCCAGGCAUCC------
dre-mir-17a-2 -CGUGAC-------------------------------
fru-mir-17-2 UCUGA---------------------------------
tni-mir-17-2 UCUGA---------------------------------
_________________________________________U_GUAGUGCUAAAGUGCUUAUAGUGCAGGUAGUGUUAU____UAGCAUCUACUGCAGUGAGAGCAC_UUCUAGCACUAC______________________________________
.............................................(((((......((((.....((...(((................)))..)).....))))........)))))........................................ ( -6.94 = -4.94 + -2.00)
.............................................(((((......((((.....((...{((................))}..)).....))))........)))))........................................ [ -7.63]
.............................................(((((......((((.....((...(((................)))..)).....))))........)))))........................................ { -6.94 = -4.94 + -2.00 d=2.13}
frequency of mfe structure in ensemble 0.990868; ensemble diversity 3.38
Download: TEXT DETAIL AliRNA.pdf Alidot.pdf
Question/Comment to
Junguk Hur