| PMID |
17969353 ( ![]() ![]() ![]() ) |
|---|---|
| Title | [Gene expression profile of spinal ventral horn in ALS] |
| Abstract | The causative pathomechanism of sporadic amyotrophic lateral sclerosis (ALS) is not clearly understood. Using microarray technology combined with laser-captured microdissection, gene expression profiles of degenerating spinal motor neurons as well as spinal ventral horn from autopsied patients with sporadic ALS were examined. Spinal motor neurons showed a distinct gene expression profile from the whole spinal ventral horn. Three percent of genes examined were significantly downregulated, and 1% were upregulated in motor neurons. In contrast with motor neurons, the total spinal ventral horn homogenates demonstrated 0.7% and 0.2% significant upregulation and downregulation of gene expression, respectively. Downregulated genes in motor neurons included those associated with cytoskeleton/axonal transport, transcription and cell surface antigens/receptors, such as dynactin 1 (DCTN1) and early growth response 3 (EGR3). In particular, DCTN1 was markedly downregulated in most residual motor neurons prior to the accumulation of pNF-H and ubiquitylated protein. Promoters for cell death pathway, death receptor 5 (DR5), cyclins C (CCNC) and A1 (CCNA), and caspases were upregulated, whereas cell death inhibitors, acetyl-CoA transporter (ACATN) and NF-kappaB (NFKB) were also upregulated. In terms of spinal ventral horn, the expression of genes related to cell surface antigens/receptors, transcription and cell adhesion/ECM were increased. The gene expression resulting in neurodegenerative and neuroprotective changes were both present in spinal motor neurons and ventral horn. Moreover, Inflammation-related genes, such as belonging to the cytokine family were not, however, significantly upregulated in either motor neurons or ventral horn. The sequence of motor neuron-specific gene expression changes from early DCTN1 downregulation to late CCNC upregulation in sporadic ALS can provide direct information on the genes leading to neurodegeneration and neuronal death, and are helpful for developing new therapeutic strategies. Tsuruma-cho, Showa-ku, Nagoya 466-8550, Japan. |
NOTE: Color highlight is limited to the abstract and SciMiner text-mining mode. If you see much more identified targets below from "Targets by SciMiner Summary" and "Targets by SciMiner Full list", they may have been identified from the full text.
Targets by SciMiner Summary
| HUGO ID | Symbol | Target Name | #Occur | ActualStr |
|---|---|---|---|---|
| 2711 | DCTN1 | dynactin 1 (p150, glued homolog, Drosophila) | 4 | dynactin 1 | DCTN1 | |
| 7794 | NFKB1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) | 2 | NFKB | NF-kappaB | |
| 3240 | EGR3 | early growth response 3 | 2 | early growth response 3 | EGR3 | |
| 95 | SLC33A1 | solute carrier family 33 (acetyl-CoA transporter), member 1 | 1 | ACATN | |
| 11905 | TNFRSF10B | tumor necrosis factor receptor superfamily, member 10b | 1 | death receptor 5 | |
| 1578 | CCNA2 | cyclin A2 | 1 | CCNA | |
Targets by SciMiner Full list
| HUGO ID | Symbol | Name | ActualStr | Score | FlankingText |
|---|---|---|---|---|---|
| 2711 | DCTN1 | dynactin 1 (p150, glued homolog, Drosophila) | DCTN1 | 0.6 | cell surface antigens/receptors, antigens receptors such as dynactin 1 (DCTN1) DCTN1 and early growth response 3 (EGR3) EGR3 |
| 3240 | EGR3 | early growth response 3 | EGR3 | 2.5 | dynactin 1 (DCTN1) DCTN1 and early growth response 3 (EGR3) EGR3 |
| 2711 | DCTN1 | dynactin 1 (p150, glued homolog, Drosophila) | DCTN1 | 0.6 | In particular DCTN1 was markedly downregulated in most residual motor neurons prior to |
| 1578 | CCNA2 | cyclin A2 | CCNA | 1.0 | 5 (DR5), DR5 cyclins C (CCNC) CCNC and A1 (CCNA), CCNA and caspases were upregulated whereas cell death inhibitors acetyl-CoA transporter |
| 95 | SLC33A1 | solute carrier family 33 (acetyl-CoA transporter), member 1 | ACATN | 1.3 | caspases were upregulated whereas cell death inhibitors acetyl-CoA transporter (ACATN) ACATN and NF-kappaB (NFKB) NFKB were also upregulated |
| 7794 | NFKB1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) | NF-kappaB | 0.5 | upregulated whereas cell death inhibitors acetyl-CoA transporter (ACATN) ACATN and NF-kappaB (NFKB) NFKB were also upregulated |
| 7794 | NFKB1 | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) | NFKB | 0.5 | cell death inhibitors acetyl-CoA transporter (ACATN) ACATN and NF-kappaB (NFKB) NFKB were also upregulated |
| 2711 | DCTN1 | dynactin 1 (p150, glued homolog, Drosophila) | DCTN1 | 0.6 | The sequence of motor neuron-specific gene expression changes from early DCTN1 downregulation to late CCNC upregulation in sporadic ALS can provide |
| 2711 | DCTN1 | dynactin 1 (p150, glued homolog, Drosophila) | dynactin 1 | 1.0 | downregulated genes in motor neurons included those associated with cytoskeleton/axonal transport transcription and cell surface antigens/receptors such as dynactin 1 dctn1 and early growth response 3 egr3 . |
| 3240 | EGR3 | early growth response 3 | early growth response 3 | 1.0 | downregulated genes in motor neurons included those associated with cytoskeleton/axonal transport transcription and cell surface antigens/receptors such as dynactin 1 dctn1 and early growth response 3 egr3 . |
| 11905 | TNFRSF10B | tumor necrosis factor receptor superfamily, member 10b | death receptor 5 | 1.0 | promoters for cell death pathway death receptor 5 dr5 cyclins c ccnc and a1 ccna and caspases were upregulated whereas cell death inhibitors acetyl coa transporter acatn and nf kappab nfkb were also upregulated. |