Document Information


PMID 17969353  (  )
Title [Gene expression profile of spinal ventral horn in ALS]
Abstract The causative pathomechanism of sporadic amyotrophic lateral sclerosis (ALS) is not clearly understood. Using microarray technology combined with laser-captured microdissection, gene expression profiles of degenerating spinal motor neurons as well as spinal ventral horn from autopsied patients with sporadic ALS were examined. Spinal motor neurons showed a distinct gene expression profile from the whole spinal ventral horn. Three percent of genes examined were significantly downregulated, and 1% were upregulated in motor neurons. In contrast with motor neurons, the total spinal ventral horn homogenates demonstrated 0.7% and 0.2% significant upregulation and downregulation of gene expression, respectively. Downregulated genes in motor neurons included those associated with cytoskeleton/axonal transport, transcription and cell surface antigens/receptors, such as dynactin 1 (DCTN1) and early growth response 3 (EGR3). In particular, DCTN1 was markedly downregulated in most residual motor neurons prior to the accumulation of pNF-H and ubiquitylated protein. Promoters for cell death pathway, death receptor 5 (DR5), cyclins C (CCNC) and A1 (CCNA), and caspases were upregulated, whereas cell death inhibitors, acetyl-CoA transporter (ACATN) and NF-kappaB (NFKB) were also upregulated. In terms of spinal ventral horn, the expression of genes related to cell surface antigens/receptors, transcription and cell adhesion/ECM were increased. The gene expression resulting in neurodegenerative and neuroprotective changes were both present in spinal motor neurons and ventral horn. Moreover, Inflammation-related genes, such as belonging to the cytokine family were not, however, significantly upregulated in either motor neurons or ventral horn. The sequence of motor neuron-specific gene expression changes from early DCTN1 downregulation to late CCNC upregulation in sporadic ALS can provide direct information on the genes leading to neurodegeneration and neuronal death, and are helpful for developing new therapeutic strategies. Tsuruma-cho, Showa-ku, Nagoya 466-8550, Japan.

NOTE: Color highlight is limited to the abstract and SciMiner text-mining mode. If you see much more identified targets below from "Targets by SciMiner Summary" and "Targets by SciMiner Full list", they may have been identified from the full text.



Targets by SciMiner Summary

HUGO ID Symbol Target Name #Occur ActualStr
2711DCTN1dynactin 1 (p150, glued homolog, Drosophila)4dynactin 1 | DCTN1 |
7794NFKB1nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)2NFKB | NF-kappaB |
3240EGR3early growth response 32early growth response 3 | EGR3 |
95SLC33A1solute carrier family 33 (acetyl-CoA transporter), member 11ACATN |
11905TNFRSF10Btumor necrosis factor receptor superfamily, member 10b1death receptor 5 |
1578CCNA2cyclin A21CCNA |

 


Targets by SciMiner Full list

HUGO ID Symbol Name ActualStr Score FlankingText
2711DCTN1dynactin 1 (p150, glued homolog, Drosophila)DCTN10.6cell surface antigens/receptors, antigens receptors such as dynactin 1 (DCTN1) DCTN1 and early growth response 3 (EGR3) EGR3
3240EGR3early growth response 3EGR32.5dynactin 1 (DCTN1) DCTN1 and early growth response 3 (EGR3) EGR3
2711DCTN1dynactin 1 (p150, glued homolog, Drosophila)DCTN10.6In particular DCTN1 was markedly downregulated in most residual motor neurons prior to
1578CCNA2cyclin A2CCNA1.05 (DR5), DR5 cyclins C (CCNC) CCNC and A1 (CCNA), CCNA and caspases were upregulated whereas cell death inhibitors acetyl-CoA transporter
95SLC33A1solute carrier family 33 (acetyl-CoA transporter), member 1ACATN1.3caspases were upregulated whereas cell death inhibitors acetyl-CoA transporter (ACATN) ACATN and NF-kappaB (NFKB) NFKB were also upregulated
7794NFKB1nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)NF-kappaB0.5upregulated whereas cell death inhibitors acetyl-CoA transporter (ACATN) ACATN and NF-kappaB (NFKB) NFKB were also upregulated
7794NFKB1nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)NFKB0.5cell death inhibitors acetyl-CoA transporter (ACATN) ACATN and NF-kappaB (NFKB) NFKB were also upregulated
2711DCTN1dynactin 1 (p150, glued homolog, Drosophila)DCTN10.6The sequence of motor neuron-specific gene expression changes from early DCTN1 downregulation to late CCNC upregulation in sporadic ALS can provide
2711DCTN1dynactin 1 (p150, glued homolog, Drosophila)dynactin 11.0downregulated genes in motor neurons included those associated with cytoskeleton/axonal transport transcription and cell surface antigens/receptors such as dynactin 1 dctn1 and early growth response 3 egr3 .
3240EGR3early growth response 3early growth response 31.0downregulated genes in motor neurons included those associated with cytoskeleton/axonal transport transcription and cell surface antigens/receptors such as dynactin 1 dctn1 and early growth response 3 egr3 .
11905TNFRSF10Btumor necrosis factor receptor superfamily, member 10bdeath receptor 51.0promoters for cell death pathway death receptor 5 dr5 cyclins c ccnc and a1 ccna and caspases were upregulated whereas cell death inhibitors acetyl coa transporter acatn and nf kappab nfkb were also upregulated.